A SUCCESSFUL USE OF A NEW SHUTTLE CLONING VECTOR PA 13 FOR THE CLONING OF THE BACTERIOCINS BACSJ and ACIDOCIN 8912

The aim of this paper was to research the molecular cloning of genes encoding the novel bacteriocin BacSJ from Lactobacillus paracasei subsp. paracasei BGSJ2-8 by using a newly constructed shuttle cloning vector pA13. A new shuttle-cloning vector, pA13, was constructed and successfully introduced into Escherichia coli, Lactobacillus and Lactococcus strains, showing a high segregational and structural stability in all three hosts. The natural plasmid pSJ2-8 from L. paracasei subsp. paracasei BGSJ2-8 was cloned in the pA13 using BamHI, obtaining the construct pB5. Sequencing and in silico analysis of the pB5 revealed 15 open reading frames (ORF). Plasmid pSJ2-8 harbors the genes encoding the production of two bacteriocins, BacSJ and acidocin 8912. The combined N-terminal amino acid sequencing of BacSJ in combination with DNA sequencing of the bacSJ2-8 gene enabled the determination of the primary structure of a bacteriocin BacSJ. The production and functional expression of BacSJ in homologous and heterologous hosts suggest that bacSJ2-8 and bacSJ2-8i together with the genes encoding the ABC transporter and accessory protein are the minimal requirement for the production of BacSJ. Biochemical and genetic analyses showed that BacSJ belongs to the class II bacteriocins. The shuttle cloning vector pA13 could be used as a tool for genetic manipulations in lactobacilli and lactococci.


INTRODUCTION
Many lactic acid bacteria (LAB) are known as producers of bacteriocins, ribosomally synthesized antimicrobial peptides (Diep and Nes, 2002).Most bacteriocins from LAB are of small size, heat-stable, cationic, amphiphilic, membrane-permeabilizing molecules.The bacteriocins can have either a narrow inhibitory spectrum limited to closely related bacteria or, in some cases, a broad inhibitory spectrum which includes food-spoilage and foodborn pathogenic bacteria (Field et al., 2007).Furthermore, Lüders and coauthors (2003) showed the synergistic effect between the eukaryotic antimicrobial peptide pleurocidin and bacteriocins from LAB that gave a new approach in their possible application.
Although classification of the bacteriocins from LAB is under reconsideration (Klaenhammer, 1993;Cotter et al., 2005;Heng and Tagg, 2006) they can be classified into three main classes.Post-translationally modified bacteriocins or lantibiotics form class I while non-modified, heat-stable bacteriocins comprise class II.Class II can be divided into subclasses: IIa (pediocin-like, antilisterial bacteriocins); IIb (two-peptide bacteriocins); IIc (cyclic bacteriocins), and IId (other peptide bacteriocins).Heat-labile bacteriocins with a higher molecular mass represent the class III.Most of class II bacteriocins are synthesized in LAB as biologically inactive peptides containing a double-glycine-type leader peptide at N-terminus.They are cleaved and exported across the cytoplasmatic membrane by ABC transporters and their accessory proteins withdrawn; due to a printing error.Link to the Editorial Decision 10.2298/ABS1004251U (Hảvarstein et al., 1995).In addition, the ABC transporter system can be a part of the complex immunity mechanism that is characteristic for some lantibiotics (McAuliffe et al., 2001).However, some bacteriocins from class II contain N-terminal extensions of the sec type that are cleaved and exported by the general secretory pathway (van Wely et al., 2001).
Plasmids are very commonly associated with the majority of the lactic acid bacteria.At first sight, the wealth of naturally occurring plasmids in LAB would seem to offer endless opportunities for the development of cloning vectors.However, many of the endogenous plasmids turned out to be cryptic and without useful selection markers like antibiotic resistance that resulted in a limitation of their use.On the other hand, plasmids have attracted attention for several reasons: i) the analysis of their distribution in nature and their genetic relationship to host cells, ii) the elucidation of their relatedness and evolutionary origins, and iii) the analysis of horizontal gene transfer, a process with tremendous impact in risk assessment of the release of genetically modified organisms.In general, lactobacilli contain multiple plasmids that can vary in size (Mayo et al., 1989).The plasmid vectors most widely used in the genetic manipulation of lactobacilli belong to three types: i) plasmids based on rolling circle replication (RCR) replicons, ii) plasmids with two origins of replication, one for E. coli and one for Gram-positive bacteria, and iii) Lactobacillus vectors with an alternative replication origin for Gram-negative bacteria.This growing interest in the characterization of Lactobacillus replicons themselves as potential useful vectors led to the development of a Lactobacillus/E.colishuttle vector (Alpert et al., 2003;Pavlova et al., 2002).Therefore, in this study we present the construction of a novel shuttle lactobacilli/lactococci/E. coli cloning vector that contained parts of the plasmids pIL253 and pA1 that will facilitate the cloning of new genes from LAB and improve the knowledge of their genetics.
In our previous work, purification of the bacteriocin BacSJ produced by Lactobacillus paracasei subsp.paracasei BGSJ2-8 resulted in a single peptide that in electrospray ionization-mass spectroscopy (ESI-MS) analysis showed a major mass peak of 5372 Da, suggesting that the BacSJ was purified to homogeneity (Lozo et al., 2007).Furthermore, plasmid curing experiments showed that the production of BacSJ depended on the presence of the plasmid pSJ2-8 (14442 bp) in L. paracasei subsp.paracasei BGSJ2-8, indicating that the complete set of genes necessary for bacteriocin production are located on this plasmid (Topisirović et al., 2006).In this work, we present the cloning and expression of the genes responsible for bacteriocin BacSJ production by using a novel shuttle cloning vector pA13.

Bacterial strains, plasmids and growth conditions
Bacterial strains and plasmids used in this study are listed in Table 1.The strains of lactobacilli were cultivated in MRS medium (Merck, GmbH, Darmstadt, Germany) at 30°C, while the strains of lactococci were cultivated in M17 medium (Merck) supplemented with D-glucose (0.5% w/v)(GM17) at 30°C.E. coli DH5α, used for the cloning and propagation of constructs, was grown in Luria-Bertani (LB) broth (Miller 1972) aerobically at 37°C.Agar plates were made by adding 1.5% (w/v) agar (Torlak, Belgrade, Serbia) to the liquid media.Transformants of L. paracasei subsp.paracasei BGHN14, BGSJ2-83 and Lactococcus lactis subsp.lactis BGMN1-596, were selected on MRS or GM17 plates containing 5 μg ml -1 of erythromycin (Sigma Chemie GmbH, Deisenhofen, Germany).E. coli transformants were selected on LB plates containing 250 μg ml -1 of erythromycin.Isopropylthioβ-D-galactoside (IPTG) (Fermentas, Vilnius, Lithuania) and 5-bromo-4-chloro-3-indolyl-β-Dgalactoside (X-Gal) (Fermentas) were added to the LB medium plates for blue/white color selection of colonies at final concentration of 0.1 mmol l -1 and 40 μg ml -1 , respectively.The cell-free supernatant of L. paracasei subsp.paracasei BGSJ2-8 was obtained by centrifugation (16 000 g for 10 min) of a 16 withdrawn; due to a printing error.Link to the Editorial Decision 10.2298/ABS1004251U hour-old culture and subsequent filtration through a 0.45 μm filter.The antagonistic activity of BGSJ2-8 and recombinant strains was evaluated by agar well diffusion assay as previously described (Lozo et al., 2004).Briefly, the wells were made in soft MRS agar containing indicator strains.Aliquots (50 μl) were poured into the wells and the plates were incubated overnight at 30°C.Bacteriocin activity and sensitivity was quantified by measuring the diameters of the inhibition zone (in mm) from the edge of the well to the end of the halo around the well.

Molecular techniques
Mini-prep isolation of plasmids from lactobacilli was performed by using the method of O'Sullivan and Klaenhammer (1993).Plasmid isolation from Digestion with restriction enzymes was conducted according to the supplier's instructions (Fermentas).Agarose gel electrophoresis, end filling of DNA fragments with the Klenow fragment of the DNA polymerase and dephosphorylation were performed by using standard methods (Sambrook et al., 1989).
Plasmids were introduced into Lactococcus and Lactobacillus by electroporation (Holo and Nes, 1989;Walker et al., 1996) using Eppendorf Electroporator (Eppendorf, Hamburg, Germany).The standard heat-shock transformation was used for plasmid transfer into E. coli (Sambrook et al., 1989).Purification of the DNA fragments was carried out using a QIAqick Gel extraction kit as described by the manufacturer (QIAGEN).DNA ligation was performed using T4 DNA ligase (New England, BioLabs, USA) according to the manufacturer's instructions.

Construction of a shuttle-cloning vector
The pA13 shuttle-cloning vector was constructed in order to perform the molecular analysis of plasmid pSJ2-8 (Fig. 1).The smallest cryptic RCR plasmid pA1 of L. plantarum A112 (Vujčić and Topisirović, 1993) was digested with EcoRI and fused with the pIL253 (Simon and Chopin, 1988), digested with the same enzyme.The new construct, designated pA-IL/EcoRI, was digested with HhaI and the obtained mixture of DNA fragments were ligated.
The ligation mixture was used to transform E. coli DH5α competent cells and the obtained Em r transformants were screened for the smallest construct possible to replicate in L. paracasei subsp.paracasei BGHN14.The plasmid named pA1-6, containing two of three HhaI DNA fragments of the plasmid pA1, and one HhaI fragment carrying the ermAM gene from pIL253, was used for the next step of plasmid construction.withdrawn; due to a printing error.Link to the Editorial Decision 10.2298/ABS1004251U The obtained Em r transformants were tested for bacteriocin production and sensitivity to it.

Analysis of segregational and structural stability of plasmid pA13 and construct pB5
The structural and segregation stability of plasmid pA13 (4 601 bp) and the largest construct pB5 (19 044 bp) was studied in E. coli, L. paracasei subsp.paracasei BGHN14 and L. lactis subsp.lactis BGMN1-596.A single transformant each host carrying either plasmid pA13 or pB5 was grown in a corresponding antibiotic-free medium for up to 50 generations.During the propagation of the cultures, the percentage of cells carrying plasmids pA13 or pB5 was determined by plating the samples on the corresponding medium with and without erythromycin until the appearance of colonies.
The structural stability of plasmid pA13 in E. coli was monitored in the medium containing erythromycin for 50 generations.The percentage of erythromycin-resistant blue colonies in E. coli was taken as the measure of the structural stability of the plasmid pA13.The structural stability of plasmid pB5 was studied in lactobacilli and E. coli in the following manner: cultures in MRS medium containing erythromycin were incubated at an appropriate temperature; after 50 generations of propagation in lactobacilli several dilutions were plated on MRS plates containing erythromycin.The percentage of erythromycin-resistant Bac + colonies was taken as the measure of structural stability.After the propagation of 50 generations in E. coli, several dilutions were plated on LB plates containing erythromycin.The plasmid DNA from one hundred colonies was isolated and used for transformation of L. paracasei subsp.paracasei BGHN14 competent cells by electroporation.The percentage of erythromycin-resistant Bac + transformants was taken as the measure of structural stability of plasmid pB5 in E. coli.

Protein and DNA sequence analysis
The bacteriocin BacSJ was purified as described previously (Lozo et al., 2007).Briefly, BacSJ was purified using cation exchange chromatography and reverse phase chromatography, followed by the final step of purification on reverse phase HPLC.The purified bacteriocin BacSJ was subjected to Nterminal amino acid sequencing by Edman degradation using a service of Alta Bioscience, University of Birmingham, UK.For DNA sequencing, pB5 and other constructs were isolated from either E. coli or L. paracasei subsp.paracasei BGHN14 using a QIAprep Spin Miniprep Kit (QIAGEN) as described by the manufacturer, with the addition of lysozyme in resuspension buffer (40 μg ml -1 ), and lysis was performed for 15 min at 37°C for lactobacilli.Sequencing of plasmid pB5 was performed by the primer-walking method of both strands in the Macrogen's sequencing service, Seoul, Korea.Sequence annotation and database search for similar sequences were performed using the BLAST site of programs at the National Center for Biotechnology Information (Altschul et al., 1997).The DNA Strider program was used for open reading frame (ORF) prediction.

Nucleotide sequence accession number
The nucleotide sequences for the plasmids pA13 and pSJ2-8 were submitted to EMBL GenBank under accession numbers FM212242 and FM246455, respectively.

Segregational and structural stability of pA13 and pB5
The pA13 vector contains a lacZ gene with a polycloning site for blue/white color screening of the inserts in E. coli, and M13 sequencing primers available for the direct sequencing of cloned fragments.In addition, the erythromycin resistance gene of pIL253 and RCR origin from the pA1 plasmid allow replication and selection in E. coli, lactobacilli and lactococci.This shuttle-cloning vector was successfully introduced into E. coli DH5α, L. lactis subsp.lactis, L. lactis subsp.cremoris and L. paracasei subsp.paracasei strains.Plasmid analysis of transformants confirmed that it was withdrawn; due to a printing error.Link to the Editorial Decision 10.2298/ABS1004251U introduced without any structural rearrangements (data not shown).
The percentage of erythromycin resistant colonies (the number of cells that retained plasmid) was taken as the measure of plasmid stability.In E. coli, after 50 generations 53% of the colonies retained the plasmid pA13 and 30% pB5; in lactobacilli the percentage of erythromycin resistant colonies after 50 generations was over Evaluation of the structural stability of pA13 in E. coli was monitored after 50 generations and 99.6% of the colonies retained plasmid with a whole lacZ gene.The structural stability of pB5 in lactobacilli showed that between five thousand colonies it was not possible to detect Bac -colonies, while in E. coli during 50 generations more than 90% of cells retained the plasmid with a whole bacteriocin operon.Analysis of the segregational and structural stability of pA13 in lactococci revealed a similar stability of plasmids as in lactobacilli.

Analysis of the nucleotide sequence of plasmid pSJ2-8
The complete sequence of plasmid pSJ2-8 consisted of 14 442 bp, with a G+C content of 42.2 %.In addition, in silico analysis of this nucleotide sequence with the DNA Strider program revealed 15 open reading frames (ORF) (Table 2 and Fig. 2).At the same time, bacteriocin BacSJ was purified, and the sequence of the first ten amino acids obtained by Edman degradation was YSYFGGSNGY.
Determination of the N-terminal sequence of the purified bacteriocin BacSJ permitted the identification of a DNA sequence that contains the bacSJ2-8 gene encoding bacteriocin synthesis.The polypeptide encoded by bacSJ2-8 is 68 amino acids long and contains a double-glycine (GG)-leader consensus at the N-terminus, while the predicted mature peptide consists of 50 amino acids.Comparative analysis of the leader peptide revealed the conserved amino acids that are characteristic for leader peptides from class II bacteriocins.The TTG start codon is preceded by a potential RBS and a -10 and -35 consensus promoter region (Fig. 3).BLAST protein sequence homology search revealed that BacSJ showed a very high homology with acidocin M (accession No. BAB86318, see Table 2), a protein of unknown function with an unidentified start codon that was located on plasmid pLA103 from L. acidophilus TK8912 (Kanatani et al., 1995).The bacSJ2-8 gene is followed by orf2, the sequence that encodes a polypeptide of 103 amino acids.The position and the size suggested that the product of this gene serves as an immunity protein (Motlagh et al., 1992).The location of the orf2 gene indicated that it has a common promoter with the bacSJ2-8 gene, and that they are most probably transcribed as one transcription unit.
Downstream of the orf2, a divergently oriented gene was located.It exhibited homology to the transposase IS30 family from L. casei ATCC334.The following orf located 1 959 bp downstream of the bacSJ2-8 was the abcT gene for the ABC transporter with the highest homology to those located in plasmid pLA103 from L. acidophilus TK8912 (Kanatani et al., 1995).Immediately after it is the orf encoding putative accessory protein.Interestingly, the gene encoding accessory protein on the plasmid pSJ2-8 was 102 amino acids shorter in comparison to the accessory protein present in pLA103.The acdT gene encoding bacteriocin acidocin 8912 (Kanatani et al., 1995), was positioned 4,063 bp downstream of the bacSJ2-8 gene.The convergently-oriented orf1 located downstream of the acdT gene encodes a putative protein of unknown function.The region from plasmid pSJ2-8 that contains the orf's mentioned above exhibited a very high sequence similarity with the part of the plasmid pLA103.The homology starts approximately 1 000 bp upstream of bacSJ2-8 gene and ends after orf1.However, it was shown that on plasmid pSJ2-8 this region contains the transposase TnpIS30 which is not present in plasmid pLA103 (Fig. 2).The other part of plasmid pSJ2-8 (carrying repB, ORF3, repB1, ORF4, ORF5, mobA, and mobC genes) does not show homology with the other plasmids from lactobacilli.In silico analysis showed that the ori sequence for the repB gene is not present whereas upstream of the repB1 gene, ori was identified with a four-times repeated sequence of 22 nucleotides (ATGTATATCAAAAAGGTCCGTC).Sequence analysis of plasmid pDOJH10L from Bifidobacterium longum DJO10A showed a structure of four direct repeats in front of the repC gene (Lee and O'Sullivan, 2006).Two mobilization proteins are located in the plasmid pSJ2-8 and the putative oriT sequence was located upstream of the mobC.

Heterologous production and functional expression of bacteriocins BacSJ and acidocin 8912
In order to examine whether the genes responsible for BacSJ and acidocin 8912 synthesis and immunity can be expressed in a different host, the plasmid pB5 that contains a complete set of genes required for the production of both bacteriocins was introduced into two Lactobacillus strains.L. paracasei subsp.paracasei BGHN14 was used for heterologous expression, whereas the Bac − deri-withdrawn; due to a printing error.Link to the Editorial Decision 10.2298/ABS1004251U vative of the parental strain, L. paracasei subsp.paracasei BGSJ2-83, was used as a homologous host.It was observed that, in both cases, supernatants of the obtained transformants gave the same size of zone of inhibition on the sensitive strain BGHN14 as the original strain L. paracasei subsp.paracasei BGSJ2-8.Furthermore, when these transformants were used as indicator strains in the test for antimicrobial activity of L. paracasei subsp.paracasei BGSJ2-8, it was observed that they were immune to the bacteriocin BacSJ (Fig. 4).
Various derivatives of plasmid pB5, designated as pBP3, pBSC5, pBE7, pEP3, pEST3, pSTP1 and pBML9 (Fig. 5A) were constructed.When L. paracasei subsp.paracasei BGHN14 was transformed with each of these constructs, it was observed that the production of bacteriocin BacSJ could be detected as a clear zone of inhibition of the indicator strain BGHN14 only if the transformant harbors the pBP3 construct (Fig. 4A).However, transformants carrying pBP3, pBSC5, pBE7, pEP3 or pEST3 constructs showed immunity to BacSJ when used as indicator strains (Fig 5B).Since the orf2 is a common feature for all constructs including the smallest one (pEST3), it could be inferred that orf2 (bacSJ2-8i) encodes the immunity protein for BacSJ (Fig. 4B).Moreover, the obtained results strongly indicate that the ABC transporter and accessory protein are necessary for the production of bacteriocin BacSJ.On the other hand, the ABC transporter does not contribute to the immunity against the BacSJ.
The transformants of L. paracasei subsp.paracasei BGSJ2-83 harboring either pB5 or pBML9 constructs were used to test whether they are able to produce bacteriocin acidocin 8912.For this purpose, BGHN14 carrying the constructs pBSC5, pBE7, pEP3, pEST3 or pSTP1 (Fig. 5) was used as the indicator strain.Both BGSJ2-83 transformants showed the zone of inhibition on each indicator strain.However, in this case the zone of inhibition had a turbid appearance (Fig. 4B) in comparison with the zone of inhibition produced by BacSJ that has a clear appearance (Fig. 4A).Thus, plasmid pSJ2-8 contains information for the production of both bacteriocins, BacSJ and acidocin 8912.

DISCUSSION
Taking into account the importance of lactic acid bacteria (LAB), investigation of their characteristics is important from both a fundamental and applicative point of view.In the last few decades, there has been a growing interest in the natural isolates of LAB.Bacteriocins producing LAB are in the focus of research, since bacteriocins can be potential food bio-preservatives.Bacteriocin production can be considered as a part of secondary metabolism because this trait is not essential for the normal growth of the bacterial host.
The strain Lactobacillus paracasei subsp.paracasei BGSJ2-8 was isolated from home-made semihard cheese.Previous analyses showed that BGSJ2-8 produces the bacteriocin designated BacSJ (Lozo et al., 2007).The N-terminal extension of BacSJ contains a double-glycine consensus sequence at positions -1 and -2 relative to the cleavage site.This sequence confers a typical signal peptide for proteins processed and secreted by dedicated ABC transporters and their accessory proteins (Hảvarstein et al., 1995).Therefore, the bacteriocin BacSJ is most likely synthesized as a prepeptide that is cleaved at Gly-Gly residues, followed by the release of mature BacSJ.It has been previously reported that the type of double glycine leader peptides can significantly influence the level of bacteriocin production in a heterologous host (van Belkum et al., 1997), and the highest production is often obtained when its specific ABC transporter processes the leader peptide (Horn et al., 1998;Horn et al., 1999).In this study, we found that two different bacteriocins most probably use the same ABC transporter and accessory protein.Unfortunately, this premise was not possible to prove because we could not obtain a stable construct carrying only the acdT and orf1 genes using both E. coli and L. paracasei subsp.paracasei BGHN14 as hosts.The same results are already obtained for L. sakei 5 that produces two bacteriocins, sakacin T and sakacin X, withdrawn; due to a printing error.Link to the Editorial Decision 10.2298/ABS1004251U although the accessory protein was not detected in this strain (Vaughan et al., 2003).The accessory gene is usually located immediately downstream of the corresponding ABC transporter gene and cotranscribed with it, which makes the genetic organization of these two genes relatively conserved (Diep et al., 1996;Nes et al., 1996).The ABC transporter gene in pSJ2-8 is homologous to the same gene from the plasmid pLA103 of L. acidophilus TK8912 (Kanatani et al., 1995) (Table 2).In contrast, the accessory protein encoded by pSJ2-8 is shorter than that in pLA103.Nevertheless, the functionality of the truncated form of the accessory protein encoded by pSJ2-8 is maintained.
Most bacteriocin loci of Gram-positive bacteria contain the corresponding immunity gene that usually resides directly downstream of the bacteriocin structural gene and is cotranscribed with it.These proteins are usually 50 to 150 amino acid residues long and they usually do not share sequence similarities (Ennahar et al., 2000;Nes et al., 1996).Cloning experiments revealed that orf2, located next to the bacSJ2-8 gene, encodes the cognate immunity protein of the BacSJ.Further-more, the construct pEST3 that contains only the orf2 and bacSJ2-8 genes (Fig. 5) confers the immunity of transformants harboring it to BacSJ, and therefore orf2 was annotated as bacSJ2-8i.
Genes for bacteriocin production are often located on mobile elements like transposons or transferable plasmids (Kojić et al., 2006).Therefore, these genes may be frequently transferred to other bacterial lineages, and are thereby prone to different genetic rearrangements.The homology detected between the plasmids pLA103 in L. acidophilus TK8912 and pSJ2-8 in L. paracasei subsp.paracasei BGSJ2-8 suggests horizontal gene transfer (HGT) between bacteria of the same or different species.Furthermore, the presence of a mobilization protein and transposable elements in the plasmid pSJ2-8 indicates that they may contribute to the transfer and mobilization of other DNA elements among lactobacilli.Interestingly, two bacteriocins clusters (BacSJ and acidocin 8912) are interrupted and flanked with transposase genes.The functionality of transposase and other genes on pSJ2-8, namely repB, repB1, ori, mobA, mobC and oriT, will be subject of further investigation.
withdrawn; due to a printing error.Link to the Editorial Decision 10.2298/ABS1004251U In the last decade, several LAB genomes have been partially or completely sequenced.Comparative genomics, together with the conventional methods for the molecular characterization of new bacteriocins will enable a more rapid elucidation of the genes responsible for bacteriocin synthesis, maturation and export.This approach will also reveal whether bacteriocin genes belong to the group of genes that are frequently involved in HGT.However, further efforts should be made towards the elucidation of the mechanisms of transfer and mobilization of bacteriocin gene clusters among LAB, especially those from different ecological niches.There are already many examples of an independent characterization of the same bacteriocin that is synthesized by the bacteria belonging to the same or different species (Holck et al., 1992;Marugg et al., 1992;Motlagh et al., 1992).
In conclusion, the strain L. paracasei subsp.paracasei BGSJ2-8 was isolated from home-made semi-hard cheese manufactured in a village household.BGSJ2-8 produces two bacteriocins, designated BacSJ and acidocin 8912.To our knowledge, BacSJ is the first completely characterized bacteriocin produced by the L. paracasei subsp.paracasei species.The genes' encoding for bacteriocin BacSJ and acidocin 8912 production and immunity are located on the 14.4 kb large plasmid pSJ2-8.The molecular characterization of the plasmid pSJ2-8 was performed using the new shuttle cloning vector pA13.

Table 1 .
Bacterial strains and plasmids used in this study *Em r , erythromycin resistant withdrawn; due to a printing error.Link to the Editorial Decision 10.2298/ABS1004251U E. coli was carried out by using a QIAprep Spin Miniprep kit according to the manufacturer's recommendations(QIAGEN, Hilden, Germany).
The AvaII-ClaI DNA fragment from the M13mp18 phage containing the lacZ gene was blunted by Klenow DNA polymerase and inserted into the blunted unique EcoRI restriction site of plasmid pA1-6.The blue Em r transformants were selected in E. coli DH5α and the obtained plasmid, designated pA13, was characterized by restriction enzyme analysis.The analysis showed that plasmid pA13 contained two EcoRI restriction sites, because the junction of blunted ClaI and EcoRI sites caused the regeneration of the EcoRI site.To obtain the vector with a single EcoRI restriction site, the plasmid pA13 was linearized by partial digestion with EcoRI restriction enzyme, end filled with Klenow DNA polymerase, and selfligated.After restriction analysis of several blue Em r transformants, one pA13 derivative containing a unique EcoRI site at the polycloning site was purified, sequenced and used in further work.

Table 2 .
General features of putative ORFs from pSJ2-8 with best matches to sequences in the public database